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Confronting outbreaks in Somalia

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While the COVID-19 response dominates community health concerns, every missed opportunity for vaccination puts the fragile gains made against polio in Somalia at risk of being undone

Community surveillance teams for COVID-19 and acute flaccid paralysis speak to households about any individuals with symptoms in their area. The Somali polio team is currently steering the COVID-19 response and fighting ongoing polio outbreaks amid challenging conditions. Photo: WHO/SomaliaCommunity surveillance teams for COVID-19 and acute flaccid paralysis speak to households about any individuals with symptoms in their area. The Somali polio team is currently steering the COVID-19 response and fighting ongoing polio outbreaks amid challenging conditions. Photo: WHO/Somalia

22 July 2020 – For Somalis, COVID-19 is the most immediate crisis in a seemingly unending cycle of floods, food insecurity, conflict and outbreaks of vaccine-preventable diseases like measles, cholera and polio. Against this backdrop, WHO’s polio programme is working to steer the COVID-19 response and, more broadly, maintain vaccine immunity levels and improve access to health care. It’s no easy feat.

Dr Mohamed Ali Kamil, the outgoing WHO Polio Team Lead and COVID-19 incident manager for Somalia, is in awe of the commitment shown by health staff. He recently phoned a polio logistician diagnosed with COVID-19 who was experiencing symptoms to insist he stop working remotely from his sickbed. Dr Kamil recalls he said, “No sir, I will continue.”

Since the first COVID-19 case was diagnosed in Somalia on 16 March 2020, the polio programme has fought the pandemic from the ground up. Dr Kamil explains, “No other health programme has comparable expertise to serve the Somali population during the COVID-19 outbreak. During their time in the programme, members of the polio team have responded to many different disease outbreaks. This meant they were well placed and well trained to respond to COVID-19.”

“The polio programme has spent years building staff capacity and systems to implement vaccination campaigns and detect poliovirus in the community. In some ways, the team are the first and last line of defence.”

Dr Mohamed Ali Kamil, the outgoing WHO Polio Team Lead and COVID-19 incident manager for Somalia, speaks to a polio vaccinator before the onset of the pandemic. Photo: WHO/SomaliaDr Mohamed Ali Kamil, the outgoing WHO Polio Team Lead and COVID-19 incident manager for Somalia, speaks to a polio vaccinator before the onset of the pandemic. Photo: WHO/Somalia

The response includes education, case identification, contact tracing, case management and data support. As of June 2020, polio staff working as part of rapid response teams had reached 2.6 million people with messages about COVID-19 prevention. District Polio Officers within the teams have led the investigation of over 4500 people with suspected COVID-19 across the country. The country has set up 3 COVID-19 testing facilities and the polio structure established for the collection and shipment of stool samples from acute flaccid paralysis (AFP) cases has been used for the transportation of COVID-19 samples.

Throughout, polio personnel have continued their full-time work to end the circulating vaccine-derived poliovirus (cVDPV) outbreaks that have thus far paralyzed 16 children since 2017.

The team are driven by a humanitarian commitment to the Somali population, who have suffered over 30 years of protracted conflict and insecurity. At least 5.2 million people are in need of humanitarian assistance, and secondary and tertiary health care is virtually non-existent outside of a few large cities. Health literacy is low, and populations are highly vulnerable to diseases like polio, measles, cholera and now COVID-19. In November 2019, widespread flooding brought further turmoil and danger to Somali families.

The team’s work is made more difficult by the emotional toll wrought by the pandemic. To date at least 143 health workers have been identified with COVID-19 infection. In April, Ibrahim Elmi Mohamed, a District Polio Officer who spent 19 years striving for a polio-free Somalia, died of a COVID-19-related illness. His death, one of the many of frontline staff around the world due to COVID-19, remind us of the risks they face every time they go to work.

Challenges lie ahead to defeat polio

Dr Kamil is clear that the polio programme will require ongoing funding and the support of authorities, partners and communities in order to maintain polio activities amid the pandemic.

“To sustain the immunity gains we must implement a number of polio vaccination campaigns each year until the routine immunization programme can reach every Somali child with all polio vaccines. Somalia is extremely fragile and at high risk of becoming endemic for poliovirus if we do not maintain and support the polio infrastructure,” he says.

Since the cVDPV outbreaks were first detected in 2017, the programme has streamlined disease surveillance for cases of AFP and other preventable diseases, including by introducing mobile technology to record details of suspected cases. For the first time, environmental disease surveillance was introduced. Over 3 years, frontline health workers have implemented more than 15 polio campaigns, including integrated campaigns with the measles programme.

A volunteer vaccinator gives 2 drops of the polio vaccine to a Somali child in August 2019. Despite efforts, many inaccessible areas remain where the programme cannot deliver vaccines. Photo: WHO/Ilyas AhmedA volunteer vaccinator gives 2 drops of the polio vaccine to a Somali child in August 2019. Despite efforts, many inaccessible areas remain where the programme cannot deliver vaccines. Photo: WHO/Ilyas Ahmed

Dr Kamil explains, “We still don’t know where the virus is coming from exactly. There are many inaccessible areas, where we cannot deliver vaccines or respond with immunization campaigns. We suspect that the virus is circulating among vulnerable children and communities living in these areas.”

Dr Kamil feels strongly that the polio programme has a duty to support other health interventions. He says, “COVID-19 shows what the frontline polio staff can achieve and the strength of surveillance and response systems.’’

Despite the challenges, Dr Kamil retains his belief that with ongoing funding and support, the cVDPV outbreaks in Somalia can be brought to a close. He reflects, “COVID-19 is a huge emergency in Somalia. Our staff are working flat out, and we expect to see many more cases, but at the same time we must continue to fight polio. The Somali community and the world deserve to be free of this disease.”

“We must reschedule our March polio vaccination campaign which was delayed because of the COVID 19 outbreak. We must do everything possible to keep health workers safe from COVID-19. It’s a hard situation, but we must not stop until we overcome both viruses.”

 

Developing the building blocks of public health ─ strengthening laboratory capacity in Somalia

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13 July 2020 – “I had heard of diseases like Ebola before but thankfully they had never reached Somalia. When the COVID-19 pandemic struck countries around the world this year, my heart sank. When I saw how quickly COVID-19 was spreading, I thought Somalis would be in trouble. Other countries were beginning to go into lockdown everywhere and we had no capacity or skills to test patients for the virus,” says Dr Sahra Isse Mohamed, Director of the National Public Health Reference Laboratory. “But we were pleasantly surprised — within a record time of 3 weeks since the first case was reported, WHO, along with international and national partners, such as Medipark Diagnostics, a private laboratory in Mogadishu, teamed up with us to ensure that we built our own capacity to test for the virus.”

un-officials-visit-somali-labDr Sahra Isse Mohamed, Director of the National Public Health Reference Laboratory in Mogadishu, introduces UN officials to laboratory personnel and shows them testing facilities. UN Photo/Steven Candia

Strengthening laboratory capacity

On 16 March 2020, after a Somali doctor, who returned from China, was confirmed as ‘patient zero’ or the first person to be confirmed with COVID-19 in Somalia, WHO and key international partners took swift, bold steps to upgrade Somalia’s diagnostic capacity. While a swab sample from patient zero was sent to the Kenya Medical Research Institute (KEMRI) in Kenya for testing, concurrently, WHO, with funding support from the Italian Agency for Development Cooperation, supported Somalia’s Ministry of Health to procure the real-time reverse transcription polymerase chain reaction (rRT-PCR) machine to test for COVID-19 samples at the National Public Health Reference Laboratory in Mogadishu. WHO purchased 2 similar machines to set up 2 additional testing laboratories for COVID-19 — one in Hargeisa, Somaliland, and the other one in Garowe, Puntland.

WHO has further expanded the testing capability of these 3 laboratories by automating the process of viral ribonucleic acid (RNA) extraction, a vital step in testing before the virus is detected in a biological sample. Considered the ‘gold standard’ for testing of COVID-19 samples, these 3 laboratories currently have the capacity to test over 1200 samples a day. One machine of this kind can test around 360 samples a day, which can be increased if required. Such molecular testing laboratories perform under a strict biosafety level (biosafety level-2), which necessitated WHO to procure the required laboratory equipment to maintain strict biosafety levels.

WHO is also providing budgetary support for hiring additional laboratory technologists to keep these laboratories functional and for operational costs and providing other consumable supplies on a regular basis to ramp up testing. In addition, 2 international virologists have been deployed for the testing laboratory in Hargeisa, Somaliland, since April this year to oversee the effective functioning of the laboratory.

WHO has trained laboratory technicians to conduct COVID-19 tests, with a focus on maintaining high standards. The Organization provided protective gear, testing kits and other laboratory supplies for the laboratory personnel working in these laboratories.

lab-techniciansLaboratory technicians running tests at the National Public Health Reference Laboratory in Mogadishu. UN Photo/Steven Candia

“In the beginning, our laboratory staff were rushing out to test people from the community,” said Dr Sahra, “Now, trained personnel from WHO and the Ministry of Health are collecting samples from people presenting with COVID-19 symptoms and their contacts. WHO also provides support by storing samples in coldchains, in the right conditions, and sending them to any of the 3 laboratories nearby. This has really helped us, as we can focus on quality testing and training our staff.

We are now able to test for COVID-19 and other diseases ourselves, and are hoping we can keep expanding the laboratory network from 3 nationwide to one laboratory in every state, to reach more Somalis. Even though we have really been encouraged by the support we have received so far, we can still do more to fight diseases in the country,” added Dr Sahra. “It was a dream for us to have a PCR laboratory and we achieved this. We can now strive to receive international accreditation.”

Acknowledging the role of laboratories and personnel

In their efforts to show support to Somali health workers and the ongoing response to COVID-19 in Somalia, the WHO Somalia Representative Dr Mamunur Malik and the UN Secretary-General’s Special Representative for Somalia Mr James Swan visited the National Public Health Reference Laboratory in Mogadishu on 29 June 2020. They met with laboratory personnel and commended them for their dedication, hard work and professionalism in the response to the ongoing pandemic.

“Well-equipped, well-functioning laboratories are key building blocks for any health system and disease surveillance system,” said Dr Malik. “Thanks to the timely support of donors and partners, Somalia has been able to step up efforts to diagnose COVID-19 and assist people who are infected. The building of such in-country testing capability, rapidly, has helped us to monitor and track the virus spread in the community. We will continue to support these laboratories even further to build their capability to test, diagnose and respond to other infectious diseases, including all high-threat pathogens, using the same molecular testing facilities that we have supported in these 3 laboratories. We also take this opportunity to continue to express our gratitude to Somalia’s health professionals for working selflessly to protect Somalis.”

Somali women playing a key role

Explaining how difficult it has been for her to work under pressure in the last 4 months, Dr Sahra added with a smile, “I am happy to say that half of our team consists of qualified Somali women. Besides, even our Minister of Health, who is in charge of health in the country, is a lady.”

As of 11 July 2020, Somalia had 3051 confirmed COVID-19 cases; 1264 people have recovered from COVID-19, and 92 Somalis have lost their lives to the newly discovered virus.

Note

The following agencies and donors have provided support to the National Public Health Reference Laboratory: the Italian Agency for Development Cooperation (AICS), Medipark Diagnostics Laboratory, UN Development Programme (UNDP), UN Support Office for Somalia (UNSOS), UN World Food Programme (WFP) and US Agency for International Development (USAID).

UN Envoy calls for continuing support for Somalia’s ongoing response to COVID-19 and praises frontline health workers

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health-care-workers-un-envoyDuring his visit to De Martino Hospital in Mogadishu United Nations Secretary General’s Special Representative to Somalia Mr James Swan with WHO Representative Dr Sk. Md Mamunur Rahman Malik stands with health care workers and praises their tireless efforts in the fight against COVID-19

2 July 2020, Mogadishu On a visit to the major tertiary hospital in Mogadishu, which plays a critical role in the management of COVID-19 patients' care, on 21 June, the United Nations Secretary General’s Special Representative to Somalia Mr James Swan called for continuing international support to the Government’s response to COVID-19 and praised the efforts of frontline health care workers.

“Since the start of the pandemic, the United Nations family has supported the Somali Government’s response to the COVID-19 pandemic in a range of integrated ways. The De Martino Hospital has been central to testing, case detection and critical care support in Somalia,” said the United Nations Secretary General’s Special Representative. “I am glad to have had the chance to see firsthand the work being carried out by Somali health workers in responding to the need for patient care and critical care support. It has been a welcome opportunity to express the UN’s solidarity with these courageous individuals who are on the frontline of Somalia’s efforts in combating the outbreak,” he added. "I commend health workers and the Government on their tireless efforts."

UN_envoy_talks_to_hospital_staffThe UN envoy was accompanied by the Federal Minister of Health Fouzia Abikar Nur (second to right) and WHO Representative Dr Sk. Md Mamunur Rahman Malik (first left) during his visit to the hospital.

Located in the capital city of Mogadishu, the hospital is the major and only tertiary hospital in the public sector with an intensive care facility for critical care. The hospital has been recently upgraded with 71 dedicated isolation beds for the treatment of COVID-19 patients. 16 of these beds are fitted with ventilators donated by WHO and the United Nations International Organization for Migration.

Along with other partners of the UN system in Somalia, WHO continues to provide technical, logistical and operational support to this hospital for patient management and care. Recently, WHO has donated ventilators, oxygen concentrators and other essential medical and hospital supplies for patient care. WHO is also supporting budget support to the Ministry of Health to cover salaries of additional health care workers who have been hired to respond to the surge in patient numbers and provide patient care at this hospital. Recently, WHO has also helped in managing patient data with an electronic information management system for the hospital.  

While commenting on the visit, the WHO Representative stated, “We have come here to thank the health care workers of this hospital where the majority of patients with COVID-19 have been treated since the first case was officially confirmed on 16 March 2020. Since that period, health care workers have been providing dedicated services by sacrificing their own comfort. Many lives have been saved in this hospital owing to the early intervention of the health care workers. This hospital has treated over 200 patients in the last few months which is testimony to its paramount role in responding to this epidemic. We express our solidarity with them and assure them of our continued support in the days ahead".

The United Nations family’s support for Somalia’s COVID-19 response has included planning, coordinating and supporting policy development; building the capacity of health professionals working in hospitals; establishing and supporting operation of intensive care beds, making available medical oxygen, supplying personal protective equipment, ventilators and other equipment for the hospital and providing operational support to run and manage the intensive care unit in the hospital.

According to the Federal Ministry of Health and WHO, as of 2 July, 2020, there have been more than 2900 confirmed cases of COVID-19 in Somalia, including another 90 associated deaths. These cases include 93 health care professionals, with one reported death among them.

oxygen-suppliesWHO has donated ventilators, oxygen concentrators and other essential medical and hospital supplies for patient care

European Union and WHO Somalia deliver more emergency hospital supplies

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Mogadishu, 18 June 2020 – The Delegation of the European Union (EU) to Somalia conducted another special flight at the request of WHO in Somalia to airlift lifesaving medicine and other emergency hospital supplies to Beletweyne, as well as medical and laboratory supplies to Hargeisa and Garowe. These flights took place between 11 and 12 June 2020. 

In Beletweyne, an area recently affected by flooding caused by heavy rainfall, the flight delivered 3535 kgs of supplies, including oral rehydration solution, cholera saline and other emergency medicines for patient care, capable of treating over 700 suspected cases of cholera over the next 3 months. Since heavy rains are predicted for the remainder of June, these supplies will support emergency health care for cholera and other waterborne diseases for vulnerable populations in affected areas, as well as offer basic health care services in these areas, long after flood waters recede.

The flights to Hargeisa and Garowe delivered a total of 1362.5 kgs of medical and laboratory supplies to support COVID-19 response efforts. The supplies include personal protective equipment, 13 500 medical masks, 9450 gloves, 270 protective goggles, 270 gowns, 4050 respiratory masks, as well as personal protective equipment, laboratory supplies and equipment to support PCR testing for COVID-19 at both locations. All items delivered will provide critical support to ongoing efforts aimed at combatting and protecting people from COVID-19 and its spread at community level.

This joint operation remains part of the new bilateral technical coordination mechanism established between the WHO country office and the Delegation of the EU to Somalia, which aims to strengthen operational response activities, including for COVID-19. On 3 May, EU flights also airlifted critical medical equipment and supplies from Mogadishu to Kismayo to support Jubaland state in tackling COVID-19. Then, on 20 and 21 May, the EU airlifted lifesaving medicine and other emergency hospital supplies to Jowhar, Kismayo and Baidoa ‒ areas which were also affected recently by floods due to heavy rains. In addition, the European Civil Protection and Humanitarian Aid Operations (ECHO) hasy provided US$ $1.8 million to WHO’s COVID-19 preparedness and response operations in Somalia.

Related links

WHO and EU unite to fight COVID-19 in Somalia

EU and WHO unite to deliver critical life-saving supplies to flood-affected areas in Somalia

For further information:

Abdikadir Abdi
Press and information officer
EU Delegation to Somalia
Email: This e-mail address is being protected from spambots. You need JavaScript enabled to view it  

Mr Kyle Defreitas
External Relations & Resource Mobilization Officer
World Health Organization, Somalia
Mob: +254-782-501-324
Email:  This e-mail address is being protected from spambots. You need JavaScript enabled to view it

COVID-19 disrupts essential health services in fragile settings; risks reversing health gains

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17 June 2020 – The current pandemic caused by COVID-19 has strained the fragile health system in Somalia as the number of cases increases. Despite some early signs that the virus spread may be slowing down in its capital city Mogadishu and in major urban centres, cases continue to grow at subnational level as transmission spreads.

The lockdown and the social distancing measures have also raised fear among health care workers providing other routine essential health care, such as immunization for children, care of pregnant and lactating women, as well as care for malnourished children. The number of people visiting health centres for routine care has significantly dropped recently as a result of lack of public transport and other means to accessfacilities. Visiting health centres without personal protective measures, such as masks and maintaining physical distancing, puts individuals at rsik. Owing to the lack of basic and essential protective equipment, such as masks and gloves, for health care workers some vaccinators and other health care providers are not reporting for work.  

In a fragile and weak health system like in Somalia, the immediate and long-term effects to disruption of health services can be catastrophic. Somalia has made good progress in reducing under-5 mortality and maternal mortality. Thanks to the work of WHO and many other partners such as the UNICEF and UNFPA, the maternal mortality ratio was reduced by 31% overall in less than 2 decades from 1210 deaths per 100 000 live births in 2000 to 829 deaths per 100 000 live births in 2017. The under-5 mortality rate was also reduced by 27% overall in less than 2 decades from 171.1 deaths per 1000 live births in 2000 to 124.4 deaths per 1000 live births in 2017. Despite the progresses made, COVID-19 is now overshadowing and potentially reversing these health gains as the demand for routine health care is declining for fear of being infected while seeking or providing health care services.    

A modelling study published recently in a peer-reviewed medical journal has shown that the disruption of routine health care services for a prolonged period may have a devastating impact, including:

  • a 20% reduction in life-saving vaccination coverage
  • a 4% reduction in facility-based health care delivery
  • a 13% increase in childhood mortality.

A similar situation was also observed during the 2014–2015 outbreak of Ebola virus disease in Africa where analyses suggested that the increased number of deaths caused by measles, malaria, HIV/AIDS and tuberculosis attributable to health system failures exceeded deaths that were directly attributable to Ebola virus disease.

Considering the urgency of scaling up essential health services and to protect health gains, the WHO country office, in partnership with UNICEF, UNFPA and other partners has distributed face masks and gloves to all vaccination centres in the country for mass use by  vaccinators and health care providers. This has allowed immunization services to resume normally. Using physical distancing and other public health measures, WHO staff have also increased monitoring and supervisory visits to these vaccination, maternal and child health care centres to ensure that routine health services resume operations, while at the same time reducing the risk of exposure of COVID-19 to both health care seekers and providers. 

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WHO continues to scale up operations to contain the transmission of COVID-19 and end the pandemic and work with partners to ensure that essential health care services resume as soon as possible. WHO’s work for COVID-19 in Somalia which also includes support for essential health care remains underfunded. Only 20% of WHO’s emergency response appeal for COVID-I9 response has so far been funded.     

For more information:

Kyle Defreitas
External Relations & Resource Mobilization Officer
World Health Organization, Somalia
Mob: +254-782-501-324
Email: This e-mail address is being protected from spambots. You need JavaScript enabled to view it

Fouzia Bhatti
Communication Officer
WHO Country Office Mogadishu - Somalia
Tel: +252619235880
Email: This e-mail address is being protected from spambots. You need JavaScript enabled to view it

 

 

 

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