Afghanistan country profile: Influenza and respiratory disease surveillance

Rational

In Afghanistan, the current influenza surveillance system operates as a part of the Global Influenza Surveillance and Response System (GISRS), which consists of over 140 National Influenza Centers (NICs) around the world that collect and test clinical specimens, submitting a sample to WHO Collaborating Centers (WHO CC) for further characterization (WHO, 2014).

In Afghanistan, this system is managed by the General Directorate of M&E-HIS at the Ministry of Public Health and is an integral part of the National Disease Surveillance and Response (NDSR) System.

Objectives of the influenza surveillance system:

Identify types and subtypes of locally circulating viruses, and their relationship to global and regional patterns

Detect unusual and unexpected events, such as outbreaks of influenza

Generate influenza data that can be used to estimate disease burden and help decision-makers prioritize resources and plan public health interventions

Provide candidate viruses for vaccine production

Contribute to global health security by ensuring early detection of emerging respiratory pathogens with pandemic potential.

Strengthen Afghanistan’s core capacities under the International Health Regulations (IHR 2005), specifically in surveillance, laboratory detection, and timely response to public health events.

Surveillance

Sentinel surveillance system:

Type of surveillance

Sentinel

Year of establishment

2009

WHO Case definitions for integrated surveillance

Yes (SARI, ILI and SARS CoV 2)

Number of sites

10

Integrated surveillance

Yes

Event based surveillance

No

Universal testing for COVID-19

Yes

Integrated surveillance:

Pathogens

Year

Case definitions

Integration details

COVID-19

2023

Same SARI/ILI case definitions used to enroll COVID-19 and other respiratory disease patients

The COVID-19 reporting is with the national surveillance system of the MOPH in 2023. there is a total of 613 surveillance sites in the country reporting on weekly basis.

Laboratory capacities

Year of recognition by WHO

2009

Subnational lab

No

National testing algorithm

Influenza A (H1, H3, H5) and Influenza B (Victoria and Yamagata)

Sub-national testing algorithm

NA

Virus isolation/culture

Yes

Virus/antibody neutralization or hemagglutination assay

No

Antiviral susceptibility testing

No

Microneutralization assay

No

Sequencing capacity (specify pathogens)

COVID-19

Genomic sequencing for antiviral susceptibility

No

Influenza Pandemic Preparedness plans and vaccination policy

National IPPP

Year of issue

2009

Year of update

2016

Seasonal influenza vaccination policy

NA

 

National bulletins published and BoD estimates links

Burden of Diseases (BoD)

National Bulletins